A B C D E F G H I J K L M N O P Q R S T U V W X Z

W

weight - Variable in class de.jstacs.algorithms.graphs.Edge

The weight of the edge.

weights - Variable in class de.jstacs.classifiers.differentiableSequenceScoreBased.AbstractOptimizableFunction

The weights for the data.

weights - Variable in class de.jstacs.sequenceScores.statisticalModels.trainable.mixture.AbstractMixtureTrainSM

The probabilities for each component.

write(Writer, StringBuffer) - Static method in class de.jstacs.io.FileManager

This method saves a StringBuffer to a given Writer.

write(int) - Method in class de.jstacs.utils.RegExFilterOutputStream

write(Object) - Method in class de.jstacs.utils.SafeOutputStream

Writes an Object using Object.toString().

write(int) - Method in class de.jstacs.utils.SafeOutputStream

writeFile(File, StringBuffer) - Static method in class de.jstacs.io.FileManager

This method saves a StringBuffer to a given File.

writeln() - Method in class de.jstacs.utils.SafeOutputStream

Writes a line break.

writeln(Object) - Method in class de.jstacs.utils.SafeOutputStream

Writes an Object and a line break.

writeOutput() - Method in class de.jstacs.utils.galaxy.GalaxyAdaptor

Writes all output files of one program execution.

writeOutputStream(OutputStream, StringBuffer) - Static method in class de.jstacs.io.FileManager

This method saves a StringBuffer to a given OutputStream.

writer - Variable in class de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.FSDAGModelForGibbsSampling

The writer for the paramsFile in a sampling.

writer - Variable in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete.AbstractConditionalDiscreteEmission

The writer for the paramsFile in a sampling.

writer - Variable in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.HigherOrderTransition

The writer for the paramsFile in a sampling.

writeTensorToFile(String, OutputStream) - Method in class de.jstacs.algorithms.graphs.tensor.Tensor

This method writes a Tensor in the exchange format in a specified file.

WrongAlphabetException - Exception in de.jstacs.data

A WrongAlphabetException is thrown if the given Alphabet or AlphabetContainer does not support some data.

WrongAlphabetException() - Constructor for exception de.jstacs.data.WrongAlphabetException

Creates a new WrongAlphabetException with standard error message ("The data of the selected file does not match the entered alphabet.

WrongAlphabetException(String) - Constructor for exception de.jstacs.data.WrongAlphabetException

Creates a new WrongAlphabetException with given error message.

WrongLengthException - Exception in de.jstacs.data

A WrongLengthException is thrown if a given (sub)sequence length is not correct.

WrongLengthException(int) - Constructor for exception de.jstacs.data.WrongLengthException

Simple Constructor.

WrongLengthException(String) - Constructor for exception de.jstacs.data.WrongLengthException

Creates a new WrongLengthException with your own message.

WrongSequenceTypeException - Exception in de.jstacs.data.sequences

This Exception indicates that the type of the sequence ( ByteSequence, ShortSequence, ...) is not suitable for a given AlphabetContainer.

WrongSequenceTypeException() - Constructor for exception de.jstacs.data.sequences.WrongSequenceTypeException

This constructor creates a new WrongSequenceTypeException with default error message ("The sequence type is not suitable for this AlphabetContainer.