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Packages that use DurationDiffSM | |
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de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels | Provides DifferentiableStatisticalModel s that are directed graphical models. |
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif |
Uses of DurationDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels |
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Constructors in de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels with parameters of type DurationDiffSM | |
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MarkovModelDiffSM(AlphabetContainer alphabet,
int length,
double ess,
boolean plugInParameters,
InhomogeneousMarkov structureMeasure,
DurationDiffSM lengthPenalty)
This constructor creates an instance with an prior for the modeled length. |
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MarkovModelDiffSM(AlphabetContainer alphabet,
int length,
double ess,
boolean plugInParameters,
int order,
DurationDiffSM lengthPenalty)
This constructor creates an instance with an prior for the modeled length. |
Uses of DurationDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif |
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Subclasses of DurationDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif | |
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MixtureDurationDiffSM
This class implements a mixture of DurationDiffSM s. |
class |
SkewNormalLikeDurationDiffSM
This class implements a skew normal like discrete truncated distribution. |
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UniformDurationDiffSM
This scoring function implements a uniform distribution for positions. |
Constructors in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif with parameters of type DurationDiffSM | |
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ExtendedZOOPSDiffSM(boolean type,
int length,
int starts,
boolean plugIn,
HomogeneousDiffSM bg,
DifferentiableStatisticalModel[] motif,
DurationDiffSM[] posPrior,
boolean plugInBg)
This constructor creates an instance of ExtendedZOOPSDiffSM that allows to have one site of the specified motifs in a Sequence . |
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ExtendedZOOPSDiffSM(boolean type,
int length,
int starts,
boolean plugIn,
HomogeneousDiffSM bg,
DifferentiableStatisticalModel motif,
DurationDiffSM posPrior,
boolean plugInBg)
This constructor creates an instance of ExtendedZOOPSDiffSM that is either an OOPS or a ZOOPS model depending on the chosen type . |
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MixtureDurationDiffSM(int starts,
DurationDiffSM... function)
The main constructor of a MixtureDurationDiffSM . |
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