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by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen

DBcorrDB provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, as well as RNA-polymerase II and III.

You can search the data base using

  1. position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format (example),
  2. a data set of aligned sequences in FastA format, which are used to infer a PWM, or
  3. score profiles over de Bruijn sequences in a pseudo-FastA format.

Here, we additionally provide all motifs and all motif clusters for download.