Uses of Interface
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.DifferentiableEmission

Packages that use DifferentiableEmission

de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states	The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models with parameters of type DifferentiableEmission

DifferentiableHigherOrderHMM(MaxHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, DifferentiableEmission[] emission, boolean likelihood, double ess, TransitionElement... te)
This is the main constructor.

Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states

Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states with parameters of type DifferentiableEmission

SimpleDifferentiableState(DifferentiableEmission e, String name, boolean forward)
This is the constructor of a SimpleState.

Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions that implement DifferentiableEmission

class	SilentEmission This class implements a silent emission which is used to create silent states.
class	UniformEmission This class implements a simple uniform emission.

Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous that implement DifferentiableEmission

class	GaussianEmission Emission for continuous values following a Gaussian distribution.
class	PluginGaussianEmission Basic Gaussian emission distribution without random initialization of parameters.

Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete that implement DifferentiableEmission

class	AbstractConditionalDiscreteEmission The abstract super class of discrete emissions.
class	DiscreteEmission This class implements a simple discrete emission without any condition.
class	PhyloDiscreteEmission Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
class	ReferenceSequenceDiscreteEmission This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.