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Packages that use DifferentiableEmission | |
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de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models | The package provides different implementations of hidden Markov models based on AbstractHMM |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states | The package provides all interfaces and classes for states used in hidden Markov models. |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions | |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous | |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete |
Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models |
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Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models with parameters of type DifferentiableEmission | |
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DifferentiableHigherOrderHMM(MaxHMMTrainingParameterSet trainingParameterSet,
String[] name,
int[] emissionIdx,
boolean[] forward,
DifferentiableEmission[] emission,
boolean likelihood,
double ess,
TransitionElement... te)
This is the main constructor. |
Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states |
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Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states with parameters of type DifferentiableEmission | |
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SimpleDifferentiableState(DifferentiableEmission e,
String name,
boolean forward)
This is the constructor of a SimpleState . |
Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions |
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Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions that implement DifferentiableEmission | |
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class |
SilentEmission
This class implements a silent emission which is used to create silent states. |
class |
UniformEmission
This class implements a simple uniform emission. |
Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous |
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Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous that implement DifferentiableEmission | |
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class |
GaussianEmission
Emission for continuous values following a Gaussian distribution. |
class |
PluginGaussianEmission
Basic Gaussian emission distribution without random initialization of parameters. |
Uses of DifferentiableEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete |
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Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete that implement DifferentiableEmission | |
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class |
AbstractConditionalDiscreteEmission
The abstract super class of discrete emissions. |
class |
DiscreteEmission
This class implements a simple discrete emission without any condition. |
class |
PhyloDiscreteEmission
Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81) |
class |
ReferenceSequenceDiscreteEmission
This class implements a discrete emission that depends on some ReferenceSequenceAnnotation
at a certain reference position. |
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