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Class Summary |
| AbstractConditionalDiscreteEmission |
The abstract super class of discrete emissions. |
| DiscreteEmission |
This class implements a simple discrete emission without any condition. |
| PhyloDiscreteEmission |
Phylogenetic discrete emission
This class uses a phylogenetic tree to describe multidimensional data
It implements Felsensteins model for nucleotide substitution (F81) |
| ReferenceSequenceDiscreteEmission |
This class implements a discrete emission that depends on some ReferenceSequenceAnnotation
at a certain reference position. |