Uses of Package
de.jstacs.sequenceScores.statisticalModels.differentiable

Packages that use de.jstacs.sequenceScores.statisticalModels.differentiable

de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix	Provides an implementation of a classifier that allows to train the parameters of a set of DifferentiableStatisticalModels by a unified generative-discriminative learning principle
de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior	Provides a general definition of a parameter log-prior and a number of implementations of Laplace and Gaussian priors
de.jstacs.classifiers.differentiableSequenceScoreBased.sampling	Provides the classes for AbstractScoreBasedClassifiers that are based on SamplingDifferentiableStatisticalModels and that sample parameters using the Metropolis-Hastings algorithm.
de.jstacs.sequenceScores.statisticalModels.differentiable	Provides all DifferentiableStatisticalModels, which can compute the gradient with respect to their parameters for a given input Sequence.
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels	Provides DifferentiableStatisticalModels that are directed graphical models.
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous	Provides DifferentiableStatisticalModels that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture	Provides DifferentiableSequenceScores that are mixtures of other DifferentiableSequenceScores.
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif
de.jstacs.sequenceScores.statisticalModels.trainable	Provides all TrainableStatisticalModels, which can be learned from a single DataSet.
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.sampling

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable

AbstractDifferentiableStatisticalModel
This class is the main part of any ScoreClassifier.

AbstractVariableLengthDiffSM
This abstract class implements some methods declared in DifferentiableStatisticalModel based on the declaration of methods in VariableLengthDiffSM.

CyclicMarkovModelDiffSM
This scoring function implements a cyclic Markov model of arbitrary order and periodicity for any sequence length.

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

IndependentProductDiffSM
This class enables the user to model parts of a sequence independent of each other.

MappingDiffSM
This class implements a DifferentiableStatisticalModel that works on mapped Sequences.

MarkovRandomFieldDiffSM
This class implements the scoring function for any MRF (Markov Random Field).

MultiDimensionalSequenceWrapperDiffSM
This class implements a simple wrapper for multidimensional sequences.

NormalizedDiffSM
This class makes an unnormalized DifferentiableStatisticalModel to a normalized DifferentiableStatisticalModel.

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.

VariableLengthDiffSM
This is an interface for all DifferentiableStatisticalModels that allow to score subsequences of arbitrary length.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels

AbstractDifferentiableStatisticalModel
This class is the main part of any ScoreClassifier.

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous

AbstractDifferentiableStatisticalModel
This class is the main part of any ScoreClassifier.

AbstractVariableLengthDiffSM
This abstract class implements some methods declared in DifferentiableStatisticalModel based on the declaration of methods in VariableLengthDiffSM.

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.

VariableLengthDiffSM
This is an interface for all DifferentiableStatisticalModels that allow to score subsequences of arbitrary length.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture

AbstractDifferentiableStatisticalModel
This class is the main part of any ScoreClassifier.

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.

VariableLengthDiffSM
This is an interface for all DifferentiableStatisticalModels that allow to score subsequences of arbitrary length.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif

AbstractDifferentiableStatisticalModel
This class is the main part of any ScoreClassifier.

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.trainable

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

DifferentiableStatisticalModel
The interface for normalizable DifferentiableSequenceScores.

SamplingDifferentiableStatisticalModel
Interface for DifferentiableStatisticalModels that can be used for Metropolis-Hastings sampling in a SamplingScoreBasedClassifier.