Uses of Interface
de.jstacs.sequenceScores.statisticalModels.differentiable.VariableLengthDiffSM

Packages that use VariableLengthDiffSM

de.jstacs.sequenceScores.statisticalModels.differentiable	Provides all DifferentiableStatisticalModels, which can compute the gradient with respect to their parameters for a given input Sequence.
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous	Provides DifferentiableStatisticalModels that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture	Provides DifferentiableSequenceScores that are mixtures of other DifferentiableSequenceScores.

Uses of VariableLengthDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable that implement VariableLengthDiffSM

class	AbstractVariableLengthDiffSM This abstract class implements some methods declared in DifferentiableStatisticalModel based on the declaration of methods in VariableLengthDiffSM.
class	CyclicMarkovModelDiffSM This scoring function implements a cyclic Markov model of arbitrary order and periodicity for any sequence length.

Uses of VariableLengthDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous that implement VariableLengthDiffSM

class	HomogeneousDiffSM This is the main class for all homogeneous DifferentiableSequenceScores.
class	HomogeneousMM0DiffSM This scoring function implements a homogeneous Markov model of order zero (hMM(0)) for a fixed sequence length.
class	HomogeneousMMDiffSM This scoring function implements a homogeneous Markov model of arbitrary order for any sequence length.
class	UniformHomogeneousDiffSM This scoring function does nothing.

Uses of VariableLengthDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture that implement VariableLengthDiffSM

class

VariableLengthMixtureDiffSM This class implements a mixture of VariableLengthDiffSM by extending MixtureDiffSM and implementing the methods of VariableLengthDiffSM.

Constructors in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture with parameters of type VariableLengthDiffSM

VariableLengthMixtureDiffSM(int starts, boolean plugIn, VariableLengthDiffSM... component)
This constructor creates a new VariableLengthMixtureDiffSM.