Uses of Class
de.jstacs.results.Result

Packages that use Result

de.jstacs.classifiers	This package provides the framework for any classifier.
de.jstacs.classifiers.assessment	This package allows to assess classifiers.
de.jstacs.data.sequences.annotation	Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class
de.jstacs.results	This package provides classes for results and sets of results.
de.jstacs.utils.galaxy

Uses of Result in de.jstacs.classifiers

Subclasses of Result in de.jstacs.classifiers

static class

AbstractScoreBasedClassifier.DoubleTableResult This class is for Results given as a table of double s.

Uses of Result in de.jstacs.classifiers.assessment

Methods in de.jstacs.classifiers.assessment that return types with arguments of type Result

Collection<Result>	Sampled_RepeatedHoldOutAssessParameterSet.getAnnotation()
Collection<Result>	RepeatedSubSamplingAssessParameterSet.getAnnotation()
Collection<Result>	RepeatedHoldOutAssessParameterSet.getAnnotation()
ArrayList<Result>	KFoldCrossValidationAssessParameterSet.getAnnotation()
Collection<Result>	ClassifierAssessmentAssessParameterSet.getAnnotation() Returns a Collection of parameters containing informations about this ClassifierAssessmentAssessParameterSet.

Uses of Result in de.jstacs.data.sequences.annotation

Methods in de.jstacs.data.sequences.annotation that return Result

Result[]

SequenceAnnotation.getAnnotations() Returns the additional annotations of this SequenceAnnotation as given in the constructor.

Constructors in de.jstacs.data.sequences.annotation with parameters of type Result

CisRegulatoryModuleAnnotation(String identifier, MotifAnnotation[] motifs, Result... additionalAnnotation)
Creates a new CisRegulatoryModuleAnnotation from a set of motifs and possibly additional annotations.

IntronAnnotation(String identifier, SinglePositionSequenceAnnotation donor, SinglePositionSequenceAnnotation acceptor, Result... additionalAnnotation)
Creates a new IntronAnnotation from a donor SinglePositionSequenceAnnotation and an acceptor SinglePositionSequenceAnnotation and a set of additional annotations.

LocatedSequenceAnnotation(int position, String type, String identifier, Result... results)
Creates a new LocatedSequenceAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results result.

LocatedSequenceAnnotation(int position, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotation and sub-annotations annotations.

LocatedSequenceAnnotation(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotation and sub-annotations annotations.

LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, Result... results)
Creates a new LocatedSequenceAnnotationWithLength of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results result.

LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type type with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotations and sub-annotations annotations.

LocatedSequenceAnnotationWithLength(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type type with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotations and sub-annotations annotations.

MotifAnnotation(String identifier, int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, Result... additionalAnnotation)
Creates a new MotifAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotation.

ReferenceSequenceAnnotation(String identifier, Sequence ref, Result... results)
Creates a new ReferenceSequenceAnnotation with identifier identifier, reference sequence ref, and additional annotation (that does not fit the SequenceAnnotation definitions) given as a Result result.

SequenceAnnotation(String type, String identifier, Result result)
Creates a new SequenceAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as a Result result.

SequenceAnnotation(String type, String identifier, Result[]... results)
Creates a new SequenceAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results results.

SequenceAnnotation(String type, String identifier, SequenceAnnotation[] subAnnotations, Result... additionalAnnotation)
Creates a new SequenceAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotation.

SinglePositionSequenceAnnotation(SinglePositionSequenceAnnotation.Type type, String identifier, int position, Result... additionalAnnotation)
Creates a new SinglePositionSequenceAnnotation of type type with identifier identifier, position position and additional annotations additionalAnnotation.

StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, Result... results)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results results.

StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotations and sub-annotations annotations.

StrandedLocatedSequenceAnnotationWithLength(String type, String identifier, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) given as an array of Results additionalAnnotations and sub-annotations annotations.

Constructor parameters in de.jstacs.data.sequences.annotation with type arguments of type Result

LocatedSequenceAnnotation(int position, String type, String identifier, Collection<Result> results)
Creates a new LocatedSequenceAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as a Collection of Results result.

LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, Collection<Result> results)
Creates a new LocatedSequenceAnnotationWithLength of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as a Collection of Results result.

SequenceAnnotation(String type, String identifier, Collection<? extends Result> results)
Creates a new SequenceAnnotation of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as a Collection of Results results.

StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, Collection<Result> results)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type with identifier identifier and additional annotation (that does not fit the SequenceAnnotation definitions) given as a Collection of Results results.

Uses of Result in de.jstacs.results

Subclasses of Result in de.jstacs.results

class	CategoricalResult A class for categorical results (i.e. non-numerical results) for primitives and Strings.
class	DataSetResult Result that contains a DataSet.
class	ImageResult A class for results that are images of the PNG format.
class	ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
class	NumericalResult Class for numerical Result values.
class	SimpleResult Abstract class for a Result with a value of a primitive data type or String.
class	StorableResult Class for Results that are Storables.

Fields in de.jstacs.results with type parameters of type Result

protected AnnotatedEntityList<Result>

ResultSet.results The internally stores results.

Methods in de.jstacs.results that return Result

static Result	Result.createResult(String name, String comment, DataType datatype, Object value) Factory method to create a new Result.
Result	ResultSet.getResultAt(int index) Returns Result number index in this ResultSet.
Result	ResultSet.getResultForName(String name) Returns Result with name name in this ResultSet.
Result[]	ResultSet.getResults() Returns all internal results as an array of Results.

Methods in de.jstacs.results with parameters of type Result

boolean	Result.isCastableResult(Result test) Returns true if the data type of the Result test can be casted to that of this instance and both have the same name and comment for the Result.
boolean	Result.isComparableResult(Result test) Returns true if the Result test and the current object have the same data type, name and comment for the result.

Constructors in de.jstacs.results with parameters of type Result

ResultSet(Result result)
Constructs a new ResultSet containing one Result.

ResultSet(Result[]... results)
Constructs a new ResultSet from a two-dimensional array of Results.

Constructor parameters in de.jstacs.results with type arguments of type Result

ResultSet(Collection<? extends Result> results)
Constructs a new ResultSet from a Collection of type Result.

Uses of Result in de.jstacs.utils.galaxy

Subclasses of Result in de.jstacs.utils.galaxy

static class	GalaxyAdaptor.FileResult Result for files that are results of some computation.
static class	GalaxyAdaptor.LinkedImageResult Class for an ImageResult that is linked to a file that can be downloaded.

Methods in de.jstacs.utils.galaxy with parameters of type Result

void	GalaxyAdaptor.addResult(Result res, boolean export, boolean includeInSummary) Adds a result to the results of a program run.
String	GalaxyAdaptor.export(String filename, Result res) Exports a specified GalaxyAdaptor.LinkedImageResult of a program execution to a file provided by filename and returns the corresponding Galaxy data type.