Uses of Class de.jstacs.results.ImageResult

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Uses of Class
de.jstacs.results.ImageResult

Packages that use ImageResult
de.jstacs.classifiers	This package provides the framework for any classifier.
de.jstacs.classifiers.utils	Provides some useful classes for working with classifiers
de.jstacs.data	Provides classes for the representation of data.
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer
de.jstacs.utils.galaxy

Uses of ImageResult in de.jstacs.classifiers

Methods in de.jstacs.classifiers that return ImageResult
`static ImageResult`	`AbstractScoreBasedClassifier.DoubleTableResult.plot(REnvironment e, AbstractScoreBasedClassifier.DoubleTableResult... dtr)` This method plots an array of `AbstractScoreBasedClassifier.DoubleTableResult`s in one image.

Uses of ImageResult in de.jstacs.classifiers.utils

Methods in de.jstacs.classifiers.utils that return ImageResult
`static ImageResult`	`ClassificationVisualizer.getScatterplot(AbstractScoreBasedClassifier cl1, AbstractScoreBasedClassifier cl2, DataSet class0, DataSet class1, REnvironment e, boolean drawThreshold)` This method returns an `ImageResult` containing a scatter plot of the scores for the given classifiers `cl1` and `cl2`.
`static ImageResult`	`ClassificationVisualizer.plotScores(AbstractScoreBasedClassifier cl, DataSet class0, DataSet class1, REnvironment e, int bins, double density, String plotOptions)` This method returns an `ImageResult` containing a plot of the histograms of the scores.

Uses of ImageResult in de.jstacs.data

Methods in de.jstacs.data that return ImageResult
`static ImageResult`	`DinucleotideProperty.getPropertyImage(DataSet original, DinucleotideProperty prop, DinucleotideProperty.Smoothing smoothing, REnvironment re, int xLeft, String pltOptions, int width, int height)`
`static ImageResult`	`DinucleotideProperty.getPropertyImage(Sequence original, DinucleotideProperty prop, DinucleotideProperty.Smoothing smoothing, REnvironment re, int xLeft, String pltOptions, int width, int height)`

Uses of ImageResult in de.jstacs.motifDiscovery

Methods in de.jstacs.motifDiscovery that return ImageResult
`static ImageResult`	`MotifDiscovererToolBox.plot(MotifDiscoverer motifDisc, int component, int motif, Sequence sequence, int startpos, REnvironment r, int width, int height, MotifDiscoverer.KindOfProfile kind)` This method creates a simple plot of the profile of scores for a sequence and a start position.
`static ImageResult`	`MotifDiscovererToolBox.plotAndAnnotate(MotifDiscoverer motifDisc, int component, int motif, Sequence sequence, int startpos, REnvironment r, int width, int height, double yMin, double yMax, double threshold, MotifDiscoverer.KindOfProfile kind)` This method creates a plot of the profile of scores for a sequence and a start position and annotates bindings sites in the plot that have a higher score than `threshold`.

Methods in de.jstacs.motifDiscovery that return ImageResult

static ImageResult MotifDiscovererToolBox.plot(MotifDiscoverer motifDisc, int component, int motif, Sequence sequence, int startpos, REnvironment r, int width, int height, MotifDiscoverer.KindOfProfile kind)
This method creates a simple plot of the profile of scores for a sequence and a start position.

static ImageResult MotifDiscovererToolBox.plotAndAnnotate(MotifDiscoverer motifDisc, int component, int motif, Sequence sequence, int startpos, REnvironment r, int width, int height, double yMin, double yMax, double threshold, MotifDiscoverer.KindOfProfile kind)
This method creates a plot of the profile of scores for a sequence and a start position and annotates bindings sites in the plot that have a higher score than threshold.

Uses of ImageResult in de.jstacs.utils.galaxy

Subclasses of ImageResult in de.jstacs.utils.galaxy
`static class`	`GalaxyAdaptor.LinkedImageResult` Class for an `ImageResult` that is linked to a file that can be downloaded.