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java.lang.Objectjava.lang.Enum<MotifDiscoverer.KindOfProfile>
de.jstacs.motifDiscovery.MotifDiscoverer.KindOfProfile
public static enum MotifDiscoverer.KindOfProfile
This enum
can be used to determine which kind of profile
should be returned.
MotifDiscoverer.getProfileOfScoresFor(int, int, Sequence, int,
KindOfProfile)
Enum Constant Summary | |
---|---|
NORMALIZED_CONDITIONAL
The profile should return \log P(seq,pos|component,class) . |
|
UNNORMALIZED_CONDITIONAL
The profile should return \log Q(seq,pos|component,class) . |
|
UNNORMALIZED_JOINT
The profile should return \log Q(seq,pos,component|class) . |
Method Summary | |
---|---|
static MotifDiscoverer.KindOfProfile |
valueOf(String name)
Returns the enum constant of this type with the specified name. |
static MotifDiscoverer.KindOfProfile[] |
values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods inherited from class java.lang.Enum |
---|
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf |
Methods inherited from class java.lang.Object |
---|
getClass, notify, notifyAll, wait, wait, wait |
Enum Constant Detail |
---|
public static final MotifDiscoverer.KindOfProfile UNNORMALIZED_JOINT
\log Q(seq,pos,component|class)
.
public static final MotifDiscoverer.KindOfProfile NORMALIZED_CONDITIONAL
\log P(seq,pos|component,class)
.
public static final MotifDiscoverer.KindOfProfile UNNORMALIZED_CONDITIONAL
\log Q(seq,pos|component,class)
.
Method Detail |
---|
public static MotifDiscoverer.KindOfProfile[] values()
for (MotifDiscoverer.KindOfProfile c : MotifDiscoverer.KindOfProfile.values()) System.out.println(c);
public static MotifDiscoverer.KindOfProfile valueOf(String name)
name
- the name of the enum constant to be returned.
IllegalArgumentException
- if this enum type has no constant
with the specified name
NullPointerException
- if the argument is null
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