User contributions for Grau

19:3719:37, 7 January 2013 diff hist +982‎ Dimont ‎No edit summary

13:5213:52, 5 January 2013 diff hist +821‎ Dimont ‎No edit summary
13:3313:33, 5 January 2013 diff hist +194‎ Dimont ‎No edit summary
13:2913:29, 5 January 2013 diff hist +2,748‎ Dimont ‎No edit summary
13:2313:23, 5 January 2013 diff hist +2,873‎ Dimont ‎No edit summary
13:1613:16, 5 January 2013 diff hist +844‎ Dimont ‎No edit summary
13:1513:15, 5 January 2013 diff hist +1,123‎ N Dimont ‎ Created page with "by Jan Grau, Stefan Posch, Ivo Grosse, and Jens Keilwagen ChIPper is a universal tool for de-novo motif discovery. ChIPper has successfully been applied to ChIP-seq, ChIP-exo an..."

21:3221:32, 11 December 2012 diff hist +324‎ TALgetter ‎ →‎Download

14:0014:00, 28 August 2012 diff hist +498‎ TALgetter ‎No edit summary

00:3000:30, 27 August 2012 diff hist +99‎ TALgetter ‎No edit summary

10:5610:56, 16 August 2012 diff hist +607‎ TALgetter ‎No edit summary

22:0622:06, 15 August 2012 diff hist +30‎ TALgetter ‎ →‎Download
22:0522:05, 15 August 2012 diff hist +811‎ TALgetter ‎ →‎Installing the web-application
21:5721:57, 15 August 2012 diff hist −1‎ TALgetter ‎ →‎Running the command line application
21:5521:55, 15 August 2012 diff hist +469‎ TALgetter ‎ →‎Running the command line application
21:5121:51, 15 August 2012 diff hist +1‎ TALgetter ‎ →‎Running the command line application
21:5121:51, 15 August 2012 diff hist +1‎ TALgetter ‎ →‎Running the command line application
21:5021:50, 15 August 2012 diff hist +2,612‎ TALgetter ‎No edit summary
21:4021:40, 15 August 2012 diff hist +1,335‎ N TALgetter ‎ Created page with "TALgetter allows you to scan input sequences for putative target sites of a given TAL (transcription activator like) effector as typically expressed by many ''Xanthomonas'' bacte..."

13:4013:40, 14 July 2012 diff hist +519‎ Main Page ‎No edit summary

11:1711:17, 20 May 2012 diff hist +64‎ Main Page ‎ →‎Current release

15:1415:14, 15 May 2012 diff hist +130‎ Cookbook ‎No edit summary
15:1315:13, 15 May 2012 diff hist +63‎ MediaWiki:Sidebar ‎No edit summary
15:0715:07, 15 May 2012 diff hist +103‎ Main Page ‎ →‎Getting started & Cookbook

16:3716:37, 14 May 2012 diff hist 0‎ File:Classes.png ‎ uploaded a new version of "File:Classes.png" current

16:2616:26, 27 April 2012 diff hist +1‎ m FlowCap ‎ →‎Instructions
16:2516:25, 27 April 2012 diff hist +743‎ FlowCap ‎ →‎Instructions

11:4411:44, 25 April 2012 diff hist +973‎ FlowCap ‎No edit summary
11:3811:38, 25 April 2012 diff hist +320‎ FlowCap ‎ →‎Download
11:3111:31, 25 April 2012 diff hist +21‎ N FlowCap/ ‎ Redirected page to FlowCap current

11:4411:44, 24 April 2012 diff hist +3‎ FlowCap ‎ →‎Method description
11:1011:10, 24 April 2012 diff hist +4,146‎ N FlowCap ‎ Created page with "This page contains supplemental information to our submission to Dream6 challenge 4 "Classification of AML". For information about this challenge, please visit [http://www.the-dr..."

09:4909:49, 14 February 2012 diff hist +123‎ Dispom ‎ →‎Download

09:5309:53, 7 February 2012 diff hist −395‎ Main Page ‎ →‎Workshop

20:1620:16, 6 February 2012 diff hist −1‎ Getting started ‎ →‎Additional Requirements
20:1620:16, 6 February 2012 diff hist +453‎ Getting started ‎ →‎Additional Requirements
20:1120:11, 6 February 2012 diff hist −82‎ Getting started ‎ →‎Basic Requirements
20:1120:11, 6 February 2012 diff hist +87‎ m Getting started ‎ →‎Basic Requirements
20:0920:09, 6 February 2012 diff hist +155‎ Main Page ‎ →‎Cookbook
20:0320:03, 6 February 2012 diff hist −3‎ m Getting started ‎ →‎First steps
20:0220:02, 6 February 2012 diff hist +78‎ Getting started ‎ →‎Additional Requirements
20:0120:01, 6 February 2012 diff hist +744‎ Getting started ‎No edit summary
19:5619:56, 6 February 2012 diff hist +431‎ Main Page ‎No edit summary

10:4410:44, 3 February 2012 diff hist +9‎ m Second main course: Classifiers ‎No edit summary current
10:4310:43, 3 February 2012 diff hist +9‎ m First main course: SequenceScores ‎No edit summary
10:4210:42, 3 February 2012 diff hist +9‎ m Intermediate course: XMLParser, Parameters, and Results ‎No edit summary current
10:4110:41, 3 February 2012 diff hist +9‎ m Starter: Data handling ‎No edit summary current

17:0417:04, 2 February 2012 diff hist +458‎ FAQs ‎No edit summary current
17:0017:00, 2 February 2012 diff hist −18‎ FAQs ‎ →‎Using existing models
16:5616:56, 2 February 2012 diff hist +90‎ FAQs ‎ →‎Using existing models
16:5516:55, 2 February 2012 diff hist +116‎ FAQs ‎ →‎Using existing models
16:5216:52, 2 February 2012 diff hist +53‎ FAQs ‎ →‎Using existing models
16:5116:51, 2 February 2012 diff hist +1‎ FAQs ‎ →‎Using existing models
16:5016:50, 2 February 2012 diff hist +93‎ FAQs ‎ →‎Using existing models
16:4816:48, 2 February 2012 diff hist +8‎ FAQs ‎No edit summary
16:4616:46, 2 February 2012 diff hist +1‎ FAQs ‎ →‎Handling data
16:4616:46, 2 February 2012 diff hist +23‎ FAQs ‎No edit summary
16:2816:28, 2 February 2012 diff hist −595‎ Recipes ‎No edit summary
16:2616:26, 2 February 2012 diff hist −30‎ Dessert: Alignments, Utils, and goodies ‎No edit summary current
16:2616:26, 2 February 2012 diff hist −36‎ Second main course: Classifiers ‎No edit summary
16:2516:25, 2 February 2012 diff hist −38‎ First main course: SequenceScores ‎No edit summary
16:2516:25, 2 February 2012 diff hist −60‎ Intermediate course: XMLParser, Parameters, and Results ‎No edit summary
16:2516:25, 2 February 2012 diff hist −27‎ Starter: Data handling ‎No edit summary
16:2416:24, 2 February 2012 diff hist −38‎ Intermediate course: Optimization ‎No edit summary current
16:2416:24, 2 February 2012 diff hist −3‎ Intermediate course: Optimization ‎No edit summary
16:2316:23, 2 February 2012 diff hist −1‎ Second main course: Classifiers ‎No edit summary
16:2316:23, 2 February 2012 diff hist −4‎ Second main course: Classifiers ‎ →‎Second main course: Classifiers
16:2216:22, 2 February 2012 diff hist −19‎ Second main course: Classifiers ‎No edit summary
16:2116:21, 2 February 2012 diff hist −39‎ Second main course: Classifiers ‎No edit summary
16:1916:19, 2 February 2012 diff hist −6‎ First main course: SequenceScores ‎No edit summary
16:1916:19, 2 February 2012 diff hist +35‎ First main course: SequenceScores ‎No edit summary
16:0016:00, 2 February 2012 diff hist −711‎ Intermediate course: XMLParser, Parameters, and Results ‎No edit summary
15:5915:59, 2 February 2012 diff hist +105‎ Cookbook ‎No edit summary
15:5815:58, 2 February 2012 diff hist +170‎ Starter: Data handling ‎No edit summary
15:5515:55, 2 February 2012 diff hist +4,386‎ Version history ‎No edit summary
15:4915:49, 2 February 2012 diff hist +447‎ Downloads ‎No edit summary
15:4415:44, 2 February 2012 diff hist +3‎ MediaWiki:Sidebar ‎No edit summary
15:4315:43, 2 February 2012 diff hist +71‎ MediaWiki:Sidebar ‎No edit summary
15:0815:08, 2 February 2012 diff hist −92‎ Cookbook ‎No edit summary
14:5714:57, 2 February 2012 diff hist 0‎ N File:Classes.png ‎No edit summary
01:0601:06, 2 February 2012 diff hist +30,235‎ N Recipes ‎ Created page with "In this section, we show some more complex code examples. All these code examples can be downloaded at XXXX and may serve as a starting points for your own..."
01:0501:05, 2 February 2012 diff hist 0‎ Cookbook ‎No edit summary
01:0401:04, 2 February 2012 diff hist +270‎ Cookbook ‎No edit summary
01:0201:02, 2 February 2012 diff hist +273‎ Cookbook ‎ →‎About this cookbook
00:5700:57, 2 February 2012 diff hist +36‎ N Cookbook – Starter: Data handling ‎ moved Cookbook – Starter: Data handling to Starter: Data handling current
00:5700:57, 2 February 2012 diff hist 0‎ m Starter: Data handling ‎ moved Cookbook – Starter: Data handling to Starter: Data handling
00:5700:57, 2 February 2012 diff hist +10,466‎ N Dessert: Alignments, Utils, and goodies ‎ Created page with " In this section, we present a motley composition of interesting classes of Jstacs. == Alignments == In this subsection, we present how to compute Alignments using Jstacs. I..."
00:5600:56, 2 February 2012 diff hist +5,751‎ N Intermediate course: Optimization ‎ Created page with " For many tasks in Jstacs, especially for numerical parameter learning, we need numerical optimization techniques. We start the description of..."
00:5500:55, 2 February 2012 diff hist +17,868‎ N Second main course: Classifiers ‎ Created page with "= Second main course: Classifiers = Classifiers allow to classify, i.e., label, previously uncharacterized data. In Jstacs, we provide the abstrac..."
00:5300:53, 2 February 2012 diff hist −5‎ First main course: SequenceScores ‎No edit summary
00:5200:52, 2 February 2012 diff hist +52,158‎ N First main course: SequenceScores ‎ Created page with " [http://www.jstacs.de/api-2.0//de/jstacs/sequenceScores/SequenceScore.html SequenceScore] s define scoring functions over sequences that can as..."
00:5100:51, 2 February 2012 diff hist +24,042‎ N Intermediate course: XMLParser, Parameters, and Results ‎ Created page with " In the early days of Jstacs, we stored models, classifiers, and other Jstacs objects using the standard serialization of Java. However, this me..."
00:4900:49, 2 February 2012 diff hist +31,489‎ N Starter: Data handling ‎ Created page with " In Jstacs, data is organized at three levels: * [http://www.jstacs.de/api-2.0//de/jstacs/data/alphabets/Alphabet.html Alphabet] s for defining single s..."
00:4600:46, 2 February 2012 diff hist +6,632‎ N Cookbook ‎ Created page with "== General structure of Jstacs == A coarse view on the structure of Jstacs is presented in Figure #fig:classes (link). Being a library for statistical analysis and classific..."

22:4522:45, 31 January 2012 diff hist +23‎ N Test ‎ Created page with "<math>\partial x</math>" current

21:2521:25, 23 August 2011 diff hist −7‎ Main Page ‎No edit summary

10:4210:42, 23 July 2011 diff hist +18‎ Acknowledgements ‎ →‎Contributors

15:3515:35, 1 June 2011 diff hist +4‎ Main Page ‎No edit summary
15:3415:34, 1 June 2011 diff hist +77‎ Main Page ‎No edit summary
15:3315:33, 1 June 2011 diff hist +1‎ m Main Page ‎No edit summary
15:3315:33, 1 June 2011 diff hist +95‎ m Main Page ‎No edit summary
15:2815:28, 1 June 2011 diff hist 0‎ Main Page ‎ →‎Current release
15:2715:27, 1 June 2011 diff hist +443‎ Downloads ‎No edit summary
15:2215:22, 1 June 2011 diff hist +2,175‎ Version history ‎No edit summary

13:4113:41, 31 May 2011 diff hist +328‎ Workshop ‎No edit summary current

12:2212:22, 26 May 2011 diff hist +6‎ m Dispom ‎No edit summary
12:2112:21, 26 May 2011 diff hist +2,090‎ Dispom ‎No edit summary
12:1812:18, 26 May 2011 diff hist +6‎ m Dispom ‎ →‎Download
12:1712:17, 26 May 2011 diff hist +389‎ Dispom ‎ →‎Download

07:2207:22, 17 May 2011 diff hist +1,680‎ Dispom ‎No edit summary
07:1107:11, 17 May 2011 diff hist +801‎ Workshop ‎No edit summary

18:4018:40, 11 May 2011 diff hist +1,190‎ m Training a classifier and classifying new sequences ‎ Reverted edits by 173.244.206.128 (talk) to last revision by Keilwagen current
18:3618:36, 11 May 2011 diff hist +8,208‎ Dispom ‎ Undo revision 390 by 88.191.118.7 (talk)
18:3618:36, 11 May 2011 diff hist +17‎ Dispom ‎ Undo revision 391 by 195.184.101.131 (talk)
18:3518:35, 11 May 2011 diff hist −11‎ Dispom ‎ Undo revision 395 by 202.64.130.26 (talk)
18:3518:35, 11 May 2011 diff hist +10‎ Dispom ‎ Undo revision 398 by 62.165.156.2 (talk)
18:3518:35, 11 May 2011 diff hist −10‎ Dispom ‎ Undo revision 400 by 94.23.249.145 (talk)
18:3518:35, 11 May 2011 diff hist −22‎ Dispom ‎ Undo revision 401 by 200.68.9.226 (talk)
18:3418:34, 11 May 2011 diff hist +43‎ Dispom ‎ Undo revision 402 by 202.171.253.70 (talk)
18:3418:34, 11 May 2011 diff hist −22‎ Dispom ‎ Undo revision 412 by 134.244.77.16 (talk)
18:3418:34, 11 May 2011 diff hist +3‎ Dispom ‎ Undo revision 413 by 65.197.242.109 (talk)
18:3418:34, 11 May 2011 diff hist −4‎ Dispom ‎ Undo revision 425 by 12.3.144.12 (talk)
18:3418:34, 11 May 2011 diff hist +4‎ Dispom ‎ Undo revision 429 by 194.59.188.230 (talk)
18:3218:32, 11 May 2011 diff hist +3,895‎ Performing a 10-fold cross validation ‎ Undo revision 386 by 59.165.249.102 (talk)
18:3118:31, 11 May 2011 diff hist −33‎ Performing a 10-fold cross validation ‎ Undo revision 393 by 175.41.247.122 (talk)
18:2918:29, 11 May 2011 diff hist +1,943‎ DSHMM ‎ Undo revision 407 by 89.16.225.148 (talk)
18:2518:25, 11 May 2011 diff hist +1,082‎ m FAQs ‎ Reverted edits by 193.93.134.132 (talk) to last revision by Keilwagen
18:2318:23, 11 May 2011 diff hist +2,858‎ m Version history ‎ Reverted edits by 87.207.205.18 (talk) to last revision by Grau
18:2218:22, 11 May 2011 diff hist +1,800‎ Getting started ‎ Undo revision 387 by 216.58.41.195 (talk)
18:2218:22, 11 May 2011 diff hist −15‎ Getting started ‎ Undo revision 388 by 220.100.109.134 (talk)
18:2218:22, 11 May 2011 diff hist +10‎ Getting started ‎ Undo revision 415 by 133.50.212.25 (talk)
18:1918:19, 11 May 2011 diff hist +4,940‎ Downloads ‎ Undo revision 411 by 210.88.61.50 (talk)
18:1918:19, 11 May 2011 diff hist −8‎ Downloads ‎ Undo revision 419 by 71.5.32.3 (talk)
18:1918:19, 11 May 2011 diff hist +12‎ Downloads ‎ Undo revision 423 by 206.221.219.98 (talk)
18:1818:18, 11 May 2011 diff hist −20‎ Downloads ‎ Undo revision 428 by 24.173.94.2 (talk)
18:1418:14, 11 May 2011 diff hist +1,706‎ Main Page ‎ Undo revision 406 by 87.139.210.237 (talk)
18:1418:14, 11 May 2011 diff hist +548‎ m Main Page ‎ Reverted edits by 188.121.37.187 (talk) to last revision by 87.139.210.237

08:5908:59, 19 April 2011 diff hist +1‎ Projects ‎No edit summary
08:5808:58, 19 April 2011 diff hist +19‎ N SHMM ‎ SHMM moved to DSHMM
08:5808:58, 19 April 2011 diff hist 0‎ m DSHMM ‎ SHMM moved to DSHMM

12:5112:51, 11 March 2011 diff hist −1‎ m Dispom ‎ →‎Download

12:3212:32, 10 March 2011 diff hist +152‎ Dispom ‎ →‎Download

22:3622:36, 7 March 2011 diff hist +1‎ m Dispom ‎ →‎Start instructions
21:2521:25, 7 March 2011 diff hist +2‎ m Dispom ‎No edit summary
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21:2321:23, 7 March 2011 diff hist +608‎ Dispom ‎No edit summary
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21:1721:17, 7 March 2011 diff hist +1,765‎ Dispom ‎No edit summary

10:0310:03, 9 February 2011 diff hist +1‎ m Dream5 ‎No edit summary current

21:5021:50, 8 February 2011 diff hist +122‎ Dream5 ‎No edit summary
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21:4721:47, 8 February 2011 diff hist +735‎ Dream5 ‎No edit summary
19:4119:41, 8 February 2011 diff hist +12‎ Dream5 ‎No edit summary
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19:3719:37, 8 February 2011 diff hist +3,498‎ N Dream5 ‎ New page: __NOTOC__ by Jan Grau, Stefan Posch, Ivo Grosse, and Jens Keilwagen. == Description == === Motivation === Protein binding microarrays (PBMs) are valuable for elucidating the binding affin...

21:4821:48, 31 December 2010 diff hist 0‎ Getting started ‎ →‎Basic Requirements
21:4221:42, 31 December 2010 diff hist +426‎ Version history ‎No edit summary
21:2321:23, 31 December 2010 diff hist 0‎ m Version history ‎No edit summary
21:1721:17, 31 December 2010 diff hist +466‎ Version history ‎No edit summary
21:1621:16, 31 December 2010 diff hist 0‎ Downloads ‎ →‎Requirements
21:1621:16, 31 December 2010 diff hist +20‎ Downloads ‎ →‎Requirements
21:1521:15, 31 December 2010 diff hist −14‎ Downloads ‎ →‎Current release (v1.3.1)
21:1521:15, 31 December 2010 diff hist +448‎ Downloads ‎ →‎All versions
21:1421:14, 31 December 2010 diff hist −2‎ Main Page ‎ →‎Current release
21:1321:13, 31 December 2010 diff hist −87‎ Dispom ‎ →‎Start instructions
21:1121:11, 31 December 2010 diff hist −90‎ Dispom ‎No edit summary

12:4912:49, 16 December 2010 diff hist +248‎ DSHMM ‎ →‎Download

16:2916:29, 21 September 2010 diff hist +916‎ MiRNAs ‎ →‎Graphical representation of learned models current
16:1716:17, 21 September 2010 diff hist +88‎ MiRNAs ‎ →‎Graphical representation of learned models

13:5313:53, 2 September 2010 diff hist −1‎ m Dispom ‎ →‎Download
13:5213:52, 2 September 2010 diff hist +231‎ Dispom ‎ →‎Download

14:3214:32, 13 August 2010 diff hist −2‎ m MiRNAs ‎ →‎Abstract
14:3214:32, 13 August 2010 diff hist +4‎ m MiRNAs ‎No edit summary

16:0216:02, 1 July 2010 diff hist +1,242‎ N MiRNAs ‎ New page:  = Predicting miRNA targets utilizing an extended profile HMM = Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Wein...