Projects

This site contains projects that use Jstacs.

• MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
• Prior: apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
• GenDisMix: unifying generative and discriminative learning principles
• Dispom: de-novo discovery of differentially abundant transcription factor binding sites including their positional preference
• MiMB: probabilistic approaches to transcription factor binding site prediction
• SHMM: utilizing gene-pair orientations for improved analysis of ChIP-chip promoter array data
• DSHMM: exploiting prior knowledge and gene distances in the analysis of tumor expression profiles
• PHHMM: improved analysis of Array-CGH data
• MeDIP-HMM: HMM-based analysis of DNA methylation profiles
• FlowCap: molecular classification of acute myeloid leukaemia (AML) using flow cytometry data
• TALgetter: prediction of TAL effector target sites