Projects: Difference between revisions

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* [[MeDIP-HMM]]: HMM-based analysis of DNA methylation profiles
* [[MeDIP-HMM]]: HMM-based analysis of DNA methylation profiles
* [[FlowCap]]: molecular classification of acute myeloid leukaemia (AML) using flow cytometry data
* [[FlowCap]]: molecular classification of acute myeloid leukaemia (AML) using flow cytometry data
* [[TALgetter]]: prediction of TAL effector target sites

Revision as of 14:01, 10 February 2013

This site contains projects that use Jstacs.

  • MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
  • Prior: apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
  • GenDisMix: unifying generative and discriminative learning principles
  • Dispom: de-novo discovery of differentially abundant transcription factor binding sites including their positional preference
  • MiMB: probabilistic approaches to transcription factor binding site prediction
  • SHMM: utilizing gene-pair orientations for improved analysis of ChIP-chip promoter array data
  • DSHMM: exploiting prior knowledge and gene distances in the analysis of tumor expression profiles
  • PHHMM: improved analysis of Array-CGH data
  • MeDIP-HMM: HMM-based analysis of DNA methylation profiles
  • FlowCap: molecular classification of acute myeloid leukaemia (AML) using flow cytometry data
  • TALgetter: prediction of TAL effector target sites