de.jstacs.classifiers.performanceMeasures
Class PositivePredictiveValueForFixedSensitivity
java.lang.Object
de.jstacs.parameters.ParameterSet
de.jstacs.classifiers.performanceMeasures.AbstractPerformanceMeasure
de.jstacs.classifiers.performanceMeasures.AbstractTwoClassPerformanceMeasure
de.jstacs.classifiers.performanceMeasures.AbstractNumericalTwoClassPerformanceMeasure
de.jstacs.classifiers.performanceMeasures.PositivePredictiveValueForFixedSensitivity
- All Implemented Interfaces:
- NumericalPerformanceMeasure, PerformanceMeasure, GalaxyConvertible, Storable, Cloneable
public class PositivePredictiveValueForFixedSensitivity
- extends AbstractNumericalTwoClassPerformanceMeasure
This class implements the positive predictive value for a fixed sensitivity.
The positive predictive value is defined as
and the sensitivity is defined as
.
The classification threshold for computing the positive predictive value is chosen such that the classifier yields at least the specified sensitivity.
This measure corresponds to a specific point on the PRCurve
.
- Author:
- Jan Grau, Jens Keilwagen
Method Summary |
NumericalResultSet |
compute(double[] sortedScoresClass0,
double[] weightsClass0,
double[] sortedScoresClass1,
double[] weightsClass1)
This method allows to compute the performance measure of given sorted score ratios. |
String |
getName()
The method returns the name of the performance measure. |
Methods inherited from class de.jstacs.parameters.ParameterSet |
clone, fromGalaxy, fromXML, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy, toXML |
PositivePredictiveValueForFixedSensitivity
public PositivePredictiveValueForFixedSensitivity()
- Constructs a new instance of the performance measure
PositivePredictiveValueForFixedSensitivity
with empty parameter values.
PositivePredictiveValueForFixedSensitivity
public PositivePredictiveValueForFixedSensitivity(double sensitivity)
throws Exception
- Constructs a new instance of the performance measure
PositivePredictiveValueForFixedSensitivity
with given sensitivity
.
- Parameters:
sensitivity
- the sensitivity for which the positive predictive value should be computed
- Throws:
Exception
- if the internal parameters can not be created or the value can not be set
PositivePredictiveValueForFixedSensitivity
public PositivePredictiveValueForFixedSensitivity(StringBuffer xml)
throws NonParsableException
- The standard constructor for the interface
Storable
.
Constructs a PositivePredictiveValueForFixedSensitivity
out of an XML representation.
- Parameters:
xml
- the XML representation as StringBuffer
- Throws:
NonParsableException
- if the PositivePredictiveValueForFixedSensitivity
could not be reconstructed out of
the StringBuffer
xml
getName
public String getName()
- Description copied from interface:
PerformanceMeasure
- The method returns the name of the performance measure.
- Specified by:
getName
in interface PerformanceMeasure
- Specified by:
getName
in class AbstractPerformanceMeasure
- Returns:
- the name of the performance measure
compute
public NumericalResultSet compute(double[] sortedScoresClass0,
double[] weightsClass0,
double[] sortedScoresClass1,
double[] weightsClass1)
- Description copied from interface:
NumericalPerformanceMeasure
- This method allows to compute the performance measure of given sorted score ratios.
This method can only be used for binary classifiers.
- Specified by:
compute
in interface NumericalPerformanceMeasure
- Specified by:
compute
in interface PerformanceMeasure
- Specified by:
compute
in class AbstractNumericalTwoClassPerformanceMeasure
- Parameters:
sortedScoresClass0
- the sorted score ratios of class 0weightsClass0
- the weights of the sequences of class 0 sorted along with the scores sortedScoresClass0
sortedScoresClass1
- the sorted score ratios of class 1weightsClass1
- the weights of the sequences of class 1 sorted along with the scores sortedScoresClass1
- Returns:
- a result set containing the results of the performance measure
- See Also:
de.jstacs.utils.ToolBox#sortAlongWith(double[], double[]...)