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Packages that use BasicHigherOrderTransition.AbstractTransitionElement | |
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de.jstacs.sequenceScores.statisticalModels.trainable.hmm | The package provides all interfaces and classes for a hidden Markov model (HMM). |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models | The package provides different implementations of hidden Markov models based on AbstractHMM |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions | The package provides all interfaces and classes for transitions used in hidden Markov models. |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.elements |
Uses of BasicHigherOrderTransition.AbstractTransitionElement in de.jstacs.sequenceScores.statisticalModels.trainable.hmm |
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Methods in de.jstacs.sequenceScores.statisticalModels.trainable.hmm with parameters of type BasicHigherOrderTransition.AbstractTransitionElement | |
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protected void |
AbstractHMM.initTransition(BasicHigherOrderTransition.AbstractTransitionElement... te)
This method creates the internal transition. |
Uses of BasicHigherOrderTransition.AbstractTransitionElement in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models |
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Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models with parameters of type BasicHigherOrderTransition.AbstractTransitionElement | |
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HigherOrderHMM(HMMTrainingParameterSet trainingParameterSet,
String[] name,
Emission[] emission,
BasicHigherOrderTransition.AbstractTransitionElement... te)
This is a convenience constructor. |
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HigherOrderHMM(HMMTrainingParameterSet trainingParameterSet,
String[] name,
int[] emissionIdx,
boolean[] forward,
Emission[] emission,
BasicHigherOrderTransition.AbstractTransitionElement... te)
This is the main constructor. |
Uses of BasicHigherOrderTransition.AbstractTransitionElement in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions |
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Fields in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions declared as BasicHigherOrderTransition.AbstractTransitionElement | |
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protected BasicHigherOrderTransition.AbstractTransitionElement[] |
BasicHigherOrderTransition.transitions
The internally used BasicHigherOrderTransition.AbstractTransitionElement s. |
Methods in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions that return BasicHigherOrderTransition.AbstractTransitionElement | |
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BasicHigherOrderTransition.AbstractTransitionElement |
BasicHigherOrderTransition.AbstractTransitionElement.clone()
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Methods in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions with parameters of type BasicHigherOrderTransition.AbstractTransitionElement | |
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void |
BasicHigherOrderTransition.AbstractTransitionElement.joinStatistics(BasicHigherOrderTransition.AbstractTransitionElement... te)
This method joins the statistics of different instances and sets this joined statistic as statistic of each instance. |
void |
BasicHigherOrderTransition.AbstractTransitionElement.setParameters(BasicHigherOrderTransition.AbstractTransitionElement t)
Set values of parameters of the instance to the value of the parameters of the given instance. |
Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions with parameters of type BasicHigherOrderTransition.AbstractTransitionElement | |
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BasicHigherOrderTransition(boolean[] isSilent,
BasicHigherOrderTransition.AbstractTransitionElement... transitions)
The main constructor. |
Uses of BasicHigherOrderTransition.AbstractTransitionElement in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.elements |
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Subclasses of BasicHigherOrderTransition.AbstractTransitionElement in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.elements | |
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class |
BasicPluginTransitionElement
Basic transition element without random initialization of parameters. |
class |
BasicTransitionElement
This class implements the probability distribution for a given context, i.e. it contains all possible transition and the corresponding probabilities for a given set of previously visited states. |
class |
DistanceBasedScaledTransitionElement
Distance-based scaled transition element for an HMM with distance-scaled transition matrices (DSHMM). |
class |
ReferenceBasedTransitionElement
This class implements transition elements that utilize a reference sequence to determine the transition probability. |
class |
ScaledTransitionElement
Scaled transition element for an HMM with scaled transition matrices (SHMM). |
class |
TransitionElement
This class implements an transition element implements method used for training via sampling or gradient based optimization approach. |
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