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Packages that use ExtendedZOOPSDiffSM | |
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de.jstacs.sequenceScores.statisticalModels.differentiable | Provides all DifferentiableStatisticalModel s, which can compute the gradient with
respect to their parameters for a given input Sequence . |
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif |
Uses of ExtendedZOOPSDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable |
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Methods in de.jstacs.sequenceScores.statisticalModels.differentiable that return ExtendedZOOPSDiffSM | |
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static ExtendedZOOPSDiffSM |
DifferentiableStatisticalModelFactory.createZOOPS(int length,
DifferentiableStatisticalModel motif,
HomogeneousDiffSM bg)
This method allows to create a "zero or one occurrence per sequence" (ZOOPS) model that allows to discover binding sites in a DataSet . |
Uses of ExtendedZOOPSDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif |
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Methods in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif that return ExtendedZOOPSDiffSM | |
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ExtendedZOOPSDiffSM |
ExtendedZOOPSDiffSM.clone()
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