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Packages that use SignificantMotifOccurrencesFinder.JoinMethod | |
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de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer |
Uses of SignificantMotifOccurrencesFinder.JoinMethod in de.jstacs.motifDiscovery |
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Classes in de.jstacs.motifDiscovery that implement SignificantMotifOccurrencesFinder.JoinMethod | |
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static class |
SignificantMotifOccurrencesFinder.SumOfProbabilities
Joins several profiles containing log-probabilities into one profile containing the logarithm of the sum of the probabilities of the single profiles. |
Constructors in de.jstacs.motifDiscovery with parameters of type SignificantMotifOccurrencesFinder.JoinMethod | |
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SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
SignificantMotifOccurrencesFinder.JoinMethod joiner,
DataSet bg,
double[] weights,
double sign)
This constructor creates an instance of SignificantMotifOccurrencesFinder that uses a DataSet to determine the siginificance level. |
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SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
SignificantMotifOccurrencesFinder.RandomSeqType type,
SignificantMotifOccurrencesFinder.JoinMethod joiner,
boolean oneHistogram,
int numSequences,
double sign)
This constructor creates an instance of SignificantMotifOccurrencesFinder that uses the given SignificantMotifOccurrencesFinder.RandomSeqType to determine the siginificance level. |
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