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Packages that use SimpleDiscreteSequence | |
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de.jstacs.data.sequences | Provides classes for representing sequences. |
Uses of SimpleDiscreteSequence in de.jstacs.data.sequences |
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Subclasses of SimpleDiscreteSequence in de.jstacs.data.sequences | |
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class |
ByteSequence
This class is for sequences with the alphabet symbols encoded as byte s and can therefore be used for discrete
AlphabetContainer s with alphabets that use only few symbols. |
class |
IntSequence
This class is for sequences with the alphabet symbols encoded as int s and can therefore be used for discrete
AlphabetContainer s with alphabets that use a huge number of symbols. |
class |
MappedDiscreteSequence
This class allows to map a discrete Sequence to an new Sequence using some DiscreteAlphabetMapping s. |
class |
ShortSequence
This class is for sequences with the alphabet symbols encoded as shorts s and can therefore be used for discrete
AlphabetContainer s with alphabets that use many different symbols. |
class |
SparseSequence
This class is an implementation for sequences on one alphabet with length 4. |
Fields in de.jstacs.data.sequences declared as SimpleDiscreteSequence | |
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protected SimpleDiscreteSequence |
MappedDiscreteSequence.original
The original Sequence . |
Constructors in de.jstacs.data.sequences with parameters of type SimpleDiscreteSequence | |
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MappedDiscreteSequence(SimpleDiscreteSequence original,
DiscreteAlphabetMapping... transformation)
This method allows to create a MappedDiscreteSequence from a given Sequence and some given DiscreteAlphabetMapping s. |
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MultiDimensionalDiscreteSequence(SequenceAnnotation[] seqAn,
SimpleDiscreteSequence... sequence)
This constructor creates an MultiDimensionalDiscreteSequence from a set of individual Sequence s. |
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