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Packages that use MotifAnnotation | |
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de.jstacs.data.sequences.annotation | Provides the facilities to annotate Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class |
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer |
Uses of MotifAnnotation in de.jstacs.data.sequences.annotation |
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Constructors in de.jstacs.data.sequences.annotation with parameters of type MotifAnnotation | |
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CisRegulatoryModuleAnnotation(String identifier,
MotifAnnotation[] motifs,
Result... additionalAnnotation)
Creates a new CisRegulatoryModuleAnnotation from a set of motifs
and possibly additional annotations. |
Uses of MotifAnnotation in de.jstacs.motifDiscovery |
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Methods in de.jstacs.motifDiscovery that return MotifAnnotation | |
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MotifAnnotation[] |
SignificantMotifOccurrencesFinder.findSignificantMotifOccurrences(int motif,
Sequence seq,
int start)
This method finds the significant motif occurrences in the sequence. |
MotifAnnotation[] |
SignificantMotifOccurrencesFinder.findSignificantMotifOccurrences(int motif,
Sequence seq,
int addMax,
int start)
This method finds the significant motif occurrences in the sequence. |
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