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Packages that use LocatedSequenceAnnotationWithLength | |
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de.jstacs.data.sequences.annotation | Provides the facilities to annotate Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class |
Uses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation |
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Subclasses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation | |
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class |
IntronAnnotation
Annotation class for an intron as defined by a donor and an acceptor splice site. |
class |
MotifAnnotation
Class for a StrandedLocatedSequenceAnnotationWithLength that is a
motif. |
class |
StrandedLocatedSequenceAnnotationWithLength
Class for a SequenceAnnotation that has a position, a length and an
orientation on the strand of a Sequence . |
Methods in de.jstacs.data.sequences.annotation with parameters of type LocatedSequenceAnnotationWithLength | |
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boolean |
LocatedSequenceAnnotationWithLength.overlaps(LocatedSequenceAnnotationWithLength second)
Returns true if this LocatedSequenceAnnotationWithLength overlaps
with the location of second . |
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