|
||||||||||
PREV NEXT | FRAMES NO FRAMES All Classes |
Packages that use LocatedSequenceAnnotation | |
---|---|
de.jstacs.data.sequences.annotation | Provides the facilities to annotate Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class |
Uses of LocatedSequenceAnnotation in de.jstacs.data.sequences.annotation |
---|
Subclasses of LocatedSequenceAnnotation in de.jstacs.data.sequences.annotation | |
---|---|
class |
IntronAnnotation
Annotation class for an intron as defined by a donor and an acceptor splice site. |
class |
LocatedSequenceAnnotationWithLength
Class for a SequenceAnnotation that has a position on the sequence
and a length, e.g. for donor splice sites, exons or genes. |
class |
MotifAnnotation
Class for a StrandedLocatedSequenceAnnotationWithLength that is a
motif. |
class |
SinglePositionSequenceAnnotation
Class for some annotations that consist mainly of one position on a sequence. |
class |
StrandedLocatedSequenceAnnotationWithLength
Class for a SequenceAnnotation that has a position, a length and an
orientation on the strand of a Sequence . |
Constructors in de.jstacs.data.sequences.annotation with parameters of type LocatedSequenceAnnotation | |
---|---|
LocatedSequenceAnnotation(String type,
String identifier,
LocatedSequenceAnnotation[] annotations,
Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type
with identifier identifier , additional annotation (that does
not fit the SequenceAnnotation definitions) given as an array of
Result s additionalAnnotation and sub-annotations
annotations . |
|
LocatedSequenceAnnotationWithLength(String type,
String identifier,
LocatedSequenceAnnotation[] annotations,
Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type
type with identifier identifier , additional
annotation (that does not fit the SequenceAnnotation definitions)
given as an array of Result s additionalAnnotations
and sub-annotations annotations . |
|
StrandedLocatedSequenceAnnotationWithLength(String type,
String identifier,
StrandedLocatedSequenceAnnotationWithLength.Strand strandedness,
LocatedSequenceAnnotation[] annotations,
Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type
type with identifier identifier , additional
annotation (that does not fit the SequenceAnnotation definitions)
given as an array of Result s additionalAnnotations
and sub-annotations annotations . |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES All Classes |