Uses of Class
de.jstacs.algorithms.alignment.PairwiseStringAlignment

Packages that use PairwiseStringAlignment

de.jstacs.algorithms.alignment

Provides classes for alignments

Uses of PairwiseStringAlignment in de.jstacs.algorithms.alignment

Methods in de.jstacs.algorithms.alignment that return PairwiseStringAlignment

PairwiseStringAlignment	Alignment.getAlignment(Sequence s1, int startS1, int endS1, Sequence s2, int startS2, int endS2) Computes and returns the alignment of s1 and s2 (Alignment.Alignment(AlignmentType, Costs)).
PairwiseStringAlignment	Alignment.getAlignment(Sequence s1, Sequence s2) Computes and returns the alignment of s1 and s2 (Alignment.Alignment(AlignmentType, Costs)).