InMoDe

InMoDe is a collection of seven tools for learning, leveraging, and visualizing intra-motif dependencies within DNA binding sites and similar functional nucleotide sequences.

For a detailed description of the functionality of InMoDe see the user guide.

Download and installation

InMoDe offers three user interfaces.

• InMoDeGUI.jar -- graphical user interface
• InMoDeCLI.jar -- command line interface
• InMoDeGalaxy.jar -- for integration into own Galaxy instance

that can be started by

java -jar filename.jar

and require an existent Java installation (8u74 or later).

In addition, there are two user-friendly alternatives for installing the GUI variant of InMoDe, namely (i) a DMG for installation under Mac OS X, and (ii) a Windows installer.

Both do not require a recent Java, as they automatically install the required libraries to the local machine.