DBcorrDB

by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen

DBcorrDB provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, as well as RNA-polymerase II and III.

You can search the data base using

1. position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format (example),
2. a data set of aligned sequences in FastA format, which are used to infer a PWM, or
3. score profiles over de Bruijn sequences in a pseudo-FastA format.

Here, we additionally provide all motifs and all motif clusters for download.

Downloads

• Motifs in Jaspar format
• Motif clusters