Code examples

At this page we collected some code examples that show how to use or extend the Jstacs framework. You are invited to extend the list and submit code examples to the Jstacs forum.

Using Jstacs:

• Loading data
• Training a classifier and classifying new sequences
• Saving and loading a model
• Performing a 10-fold cross validation
• Using the REnvironment
• Compute and plot Receiver Operating Characteristic (ROC) and Precision-Recall (PR) curve
• Parameter learning
  • Train classifiers using MCL and MSP
  • Train classifiers using GenDisMix (a hybrid learning principle)

Extending Jstacs:

• Implementation of a homogeneous Markov model of order 0 based on AbstractModel