InMoDe: Difference between revisions
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[[File:InMoDe-test.png|100px|left]] | [[File:InMoDe-test.png|100px|left]] | ||
by Ralf Eggeling and Jan Grau. | by Ralf Eggeling, Ivo Grosse, and Jan Grau. | ||
InMoDe is a collection of seven tools for learning, leveraging, and visualizing '''in'''tra-'''mo'''tif '''de'''pendencies within DNA binding sites and similar functional nucleotide sequences. | InMoDe is a collection of seven tools for learning, leveraging, and visualizing '''in'''tra-'''mo'''tif '''de'''pendencies within DNA binding sites and similar functional nucleotide sequences. | ||
Revision as of 15:51, 23 August 2016
by Ralf Eggeling, Ivo Grosse, and Jan Grau.
InMoDe is a collection of seven tools for learning, leveraging, and visualizing intra-motif dependencies within DNA binding sites and similar functional nucleotide sequences.
For a detailed description of the functionality of InMoDe see the user guide.
Download and installation
InMoDe offers three user interfaces.
- InMoDeGUI.jar -- graphical user interface
- InMoDeCLI.jar -- command line interface
- InMoDeGalaxy.jar -- for integration into own Galaxy instance
that can be started by
java -jar filename.jar
and require an existent Java installation (8u74 or later).
In addition, there are two user-friendly alternatives for installing the GUI variant of InMoDe, namely (i) a DMG for installation under Mac OS X, and (ii) a Windows installer.
Both do not require a recent Java, as they automatically install the required libraries to the local machine.
