DBcorrDB

by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen

DBcorrDB provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, and RNA-polymerase II and III.

You can search the data base using i) position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format (example), ii) a data set of aligned sequences in FastA format, which are used to infer a PWM, or iii) score profiles over de Bruijn sequences in a pseudo-FastA format.

Here, we additionally provide all motifs and all motif clusters for download.

Downloads

• Motifs in Jaspar format
• Motif clusters