Getting started - Revision history

Grau at 14:45, 12 February 2016

2016-02-12T14:45:29Z

← Older revision		Revision as of 14:45, 12 February 2016
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	__NOTOC__		__NOTOC__
	We recommend to use a [~~http~~://en.wikipedia.org/wiki/~~Software_development_environment software~~ development environment] (~~SDE~~) as for instance [http://www.eclipse.org eclipse].		We recommend to use a [https://en.wikipedia.org/wiki/Integrated_development_environment integrated development environment] (IDE) as for instance [http://www.eclipse.org eclipse].

	== Basic Requirements ==		== Basic Requirements ==
	* Make sure that you have installed [http://java.sun.com/javase/downloads/index.jsp Java] 1.6 or later.		* Make sure that you have installed [http://java.sun.com/javase/downloads/index.jsp Java] 1.7 or later.
	* Download latest version of [http://www.jstacs.de/index.php/Downloads Jstacs].		* Download latest version of [http://www.jstacs.de/index.php/Downloads Jstacs].
	* Include all <code>jar</code>s (<code>jstacs-<version>.jar</code> and further potentially required <code>jar</code>s from the <code>lib</code> directory of Jstacs) into your classpath:		* Include all <code>jar</code>s (<code>jstacs-<version>.jar</code> and further potentially required <code>jar</code>s from the <code>lib</code> directory of Jstacs) into your classpath:
	** Using a ~~SDE~~, you have to add the <code>jar</code>s to the Java build path by changing the properties of your project.		** Using a IDE, you have to add the <code>jar</code>s to the Java build path by changing the properties of your project.
	** Using command line, you have to compile your program using: <code>javac -cp <JARs> <YourClass>.java</code> where <code><JARs></code> contains the path to all your jar-files.		** Using command line, you have to compile your program using: <code>javac -cp <JARs> <YourClass>.java</code> where <code><JARs></code> contains the path to all your jar-files.
	* Run your program:		* Run your program:
	** Using a ~~SDE~~, running jobs depends on the ~~SDE~~ and is often linked with some button.		** Using a IDE, running jobs depends on the IDE and is often linked with some button.
	** Using command line, you have to use <code>java -cp <JARs> <YourClass></code>.		** Using command line, you have to use <code>java -cp <JARs> <YourClass></code>.

Grau: /* Additional Requirements */

2012-02-06T18:16:25Z

Additional Requirements

← Older revision		Revision as of 18:16, 6 February 2012
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	* If you want to use [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime], you must compile <code>de_jstacs_utils_UserTime.c</code> and you must set the library-path (<code>-Djava.library.path</code>) to the directory where the dynamic library resides. For details see the documentation of [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime].		* If you want to use [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime], you must compile <code>de_jstacs_utils_UserTime.c</code> and you must set the library-path (<code>-Djava.library.path</code>) to the directory where the dynamic library resides. For details see the documentation of [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime].

	* Some parts of Jstacs require additional libraries. For instance, [http://www.jstacs.de/api/de/jstacs/utils/REnvironment.html REnvironment] requires <code>RServe-<version>.jar</code> or [http://www.jstacs.de/api/de/jstacs/data/bioJava/BioJavaAdapter.html BioJavaAdapter] requires <code>biojava-live.jar</code> and <code>bytecode.jar</code>. ~~These~~ libraries can be found in the <code>lib</code> directory of the [[Downloads\|binary version]] of Jstacs.		* Some parts of Jstacs require additional libraries. For instance, [http://www.jstacs.de/api/de/jstacs/utils/REnvironment.html REnvironment] requires <code>RServe-<version>.jar</code> or [http://www.jstacs.de/api/de/jstacs/data/bioJava/BioJavaAdapter.html BioJavaAdapter] requires <code>biojava-live.jar</code> and <code>bytecode.jar</code>. Such libraries can be found in the <code>lib</code> directory of the [[Downloads\|binary version]] of Jstacs.

	* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].		* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].

Grau: /* Additional Requirements */

2012-02-06T18:16:07Z

Additional Requirements

← Older revision		Revision as of 18:16, 6 February 2012
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	* If you want to use [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime], you must compile <code>de_jstacs_utils_UserTime.c</code> and you must set the library-path (<code>-Djava.library.path</code>) to the directory where the dynamic library resides. For details see the documentation of [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime].		* If you want to use [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime], you must compile <code>de_jstacs_utils_UserTime.c</code> and you must set the library-path (<code>-Djava.library.path</code>) to the directory where the dynamic library resides. For details see the documentation of [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime].

			* Some parts of Jstacs require additional libraries. For instance, [http://www.jstacs.de/api/de/jstacs/utils/REnvironment.html REnvironment] requires <code>RServe-<version>.jar</code> or [http://www.jstacs.de/api/de/jstacs/data/bioJava/BioJavaAdapter.html BioJavaAdapter] requires <code>biojava-live.jar</code> and <code>bytecode.jar</code>. These libraries can be found in the <code>lib</code> directory of the [[Downloads\|binary version]] of Jstacs.

	* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].		* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].

Grau: /* Basic Requirements */

2012-02-06T18:11:41Z

Basic Requirements

← Older revision		Revision as of 18:11, 6 February 2012
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	** Using a SDE, running jobs depends on the SDE and is often linked with some button.		** Using a SDE, running jobs depends on the SDE and is often linked with some button.
	** Using command line, you have to use <code>java -cp <JARs> <YourClass></code>.		** Using command line, you have to use <code>java -cp <JARs> <YourClass></code>.
	* Under [[Code examples]] you can find examples for how to use and extend Jstacs.

	== Additional Requirements ==		== Additional Requirements ==

Grau: /* Basic Requirements */

2012-02-06T18:11:25Z

Basic Requirements

← Older revision		Revision as of 18:11, 6 February 2012
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	* Make sure that you have installed [http://java.sun.com/javase/downloads/index.jsp Java] 1.6 or later.		* Make sure that you have installed [http://java.sun.com/javase/downloads/index.jsp Java] 1.6 or later.
	* Download latest version of [http://www.jstacs.de/index.php/Downloads Jstacs].		* Download latest version of [http://www.jstacs.de/index.php/Downloads Jstacs].
	* Include all <code>jar</code>s (~~e.g.~~ <code>jstacs-<version>.jar</code>~~, ...~~) into your classpath:		* Include all <code>jar</code>s (<code>jstacs-<version>.jar</code> and further potentially required <code>jar</code>s from the <code>lib</code> directory of Jstacs) into your classpath:
	** Using a SDE, you have to add the <code>jar</code>s to the Java build path by changing the properties of your project.		** Using a SDE, you have to add the <code>jar</code>s to the Java build path by changing the properties of your project.
	** Using command line, you have to compile your program using: <code>javac -cp <JARs> <YourClass>.java</code> where <code><JARs></code> contains the path to all your jar-files.		** Using command line, you have to compile your program using: <code>javac -cp <JARs> <YourClass>.java</code> where <code><JARs></code> contains the path to all your jar-files.

Grau: /* First steps */

2012-02-06T18:03:08Z

First steps

← Older revision		Revision as of 18:03, 6 February 2012
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	== First steps ==		== First steps ==
	For your first steps with Jstacs, we recommend to [http://www.jstacs.de/downloads/recipes.zip download] the [[Recipes]] of the Jstacs [[Cookbook]] and start with compiling and running one of the simpler code examples, for instance the [[Code_examples#Creation_of_user-specfic_alphabet \| ~~Creation~~ of user-specfic alphabet]]. If you could compile and run this example successfully, you might want to have a look at the other [[Code examples]] and choose one of them as the starting point of your own application.		For your first steps with Jstacs, we recommend to [http://www.jstacs.de/downloads/recipes.zip download] the [[Recipes]] of the Jstacs [[Cookbook]] and start with compiling and running one of the simpler code examples, for instance the [[Code_examples#Creation_of_user-specfic_alphabet\|Creation of user-specfic alphabet]]. If you could compile and run this example successfully, you might want to have a look at the other [[Code examples]] and choose one of them as the starting point of your own application.
	If you want to extend Jstacs by your own model, classifier, or learning principle, we recommend to read the Jstacs [[Cookbook]] and use the [http://www.jstacs.de/api/index.html API documentation] for an overview of current implementation and abstract classes you could possibly make use of.		If you want to extend Jstacs by your own model, classifier, or learning principle, we recommend to read the Jstacs [[Cookbook]] and use the [http://www.jstacs.de/api/index.html API documentation] for an overview of current implementation and abstract classes you could possibly make use of.

Grau: /* Additional Requirements */

2012-02-06T18:02:46Z

Additional Requirements

← Older revision		Revision as of 18:02, 6 February 2012
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	* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].		* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].
	== First steps ==
	For your first steps with Jstacs, we recommend to [[download]] the [[Recipes]] of the Jstacs [[Cookbook]] and start with compiling and running one of the simpler code examples, for instance the [[Code_examples#Creation_of_user-specfic_alphabet]]. If you could compile and run this example successfully, you might want to have a look at the other [[Code examples]] and choose one of them as the starting point of your own application.		== First steps ==
			For your first steps with Jstacs, we recommend to [http://www.jstacs.de/downloads/recipes.zip download] the [[Recipes]] of the Jstacs [[Cookbook]] and start with compiling and running one of the simpler code examples, for instance the [[Code_examples#Creation_of_user-specfic_alphabet \| Creation of user-specfic alphabet]]. If you could compile and run this example successfully, you might want to have a look at the other [[Code examples]] and choose one of them as the starting point of your own application.
	If you want to extend Jstacs by your own model, classifier, or learning principle, we recommend to read the Jstacs [[Cookbook]] and use the [http://www.jstacs.de/api/index.html API documentation] for an overview of current implementation and abstract classes you could possibly make use of.		If you want to extend Jstacs by your own model, classifier, or learning principle, we recommend to read the Jstacs [[Cookbook]] and use the [http://www.jstacs.de/api/index.html API documentation] for an overview of current implementation and abstract classes you could possibly make use of.

Grau at 18:01, 6 February 2012

2012-02-06T18:01:53Z

← Older revision		Revision as of 18:01, 6 February 2012
Line 19:		Line 19:

	* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].		* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].
			== First steps ==
			For your first steps with Jstacs, we recommend to [[download]] the [[Recipes]] of the Jstacs [[Cookbook]] and start with compiling and running one of the simpler code examples, for instance the [[Code_examples#Creation_of_user-specfic_alphabet]]. If you could compile and run this example successfully, you might want to have a look at the other [[Code examples]] and choose one of them as the starting point of your own application.
			If you want to extend Jstacs by your own model, classifier, or learning principle, we recommend to read the Jstacs [[Cookbook]] and use the [http://www.jstacs.de/api/index.html API documentation] for an overview of current implementation and abstract classes you could possibly make use of.

Grau: Undo revision 387 by 216.58.41.195 (talk)

2011-05-11T16:22:49Z

Undo revision 387 by 216.58.41.195 (talk)

← Older revision		Revision as of 16:22, 11 May 2011
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	~~It'~~s ~~spooky~~ how ~~clever some ppl are~~. ~~Thnaks!~~		__NOTOC__
			We recommend to use a [http://en.wikipedia.org/wiki/Software_development_environment software development environment] (SDE) as for instance [http://www.eclipse.org eclipse].

			== Basic Requirements ==
			* Make sure that you have installed [http://java.sun.com/javase/downloads/index.jsp Java] 1.6 or later.
			* Download latest version of [http://www.jstacs.de/index.php/Downloads Jstacs].
			* Include all <code>jar</code>s (e.g. <code>jstacs-<version>.jar</code>, ...) into your classpath:
			** Using a SDE, you have to add the <code>jar</code>s to the Java build path by changing the properties of your project.
			** Using command line, you have to compile your program using: <code>javac -cp <JARs> <YourClass>.java</code> where <code><JARs></code> contains the path to all your jar-files.
			* Run your program:
			** Using a SDE, running jobs depends on the SDE and is often linked with some button.
			** Using command line, you have to use <code>java -cp <JARs> <YourClass></code>.
			* Under [[Code examples]] you can find examples for how to use and extend Jstacs.

			== Additional Requirements ==
			* If you want to use [http://www.jstacs.de/api/de/jstacs/utils/REnvironment.html REnvironment], you must have a server with a running instance of [http://www.r-project.org/ R] and [http://www.rforge.net/Rserve/ Rserve].

			* If you want to use [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime], you must compile <code>de_jstacs_utils_UserTime.c</code> and you must set the library-path (<code>-Djava.library.path</code>) to the directory where the dynamic library resides. For details see the documentation of [http://www.jstacs.de/api/de/jstacs/utils/UserTime.html UserTime].

			* We use LaTeX to include formulas in our javadoc-comments. To render these as images, you need [http://users.informatik.uni-halle.de/~grau/LaTeXlet/ LaTeXlet].

Grau: Undo revision 388 by 220.100.109.134 (talk)

2011-05-11T16:22:31Z

Undo revision 388 by 220.100.109.134 (talk)

← Older revision		Revision as of 16:22, 11 May 2011
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	~~SHDTEu <a href="http://cdqmjbtwvpwj~~.~~com/">cdqmjbtwvpwj</a>~~		It's spooky how clever some ppl are. Thnaks!